Difference between revisions of "Systems biology - manual model construction"

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(Building from scratch)
(Building from scratch)
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A pathway diagram opened in the work space has a tool bar as shown below:  
 
A pathway diagram opened in the work space has a tool bar as shown below:  
 
 
<br><br>[[File:Model_fromscratch_Fig4.png]]<br><br>
 
<br><br>[[File:Model_fromscratch_Fig4.png]]<br><br>
 
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Revision as of 00:16, 16 March 2022

Contents

Building from scratch

Creation of a new diagram

The model development process is initiated by creation of the model network or diagram. A new diagram can be made in the Work Space by two methods:

  1. via Control Panel → New Diagram (Note: please select the correct folder for a new diagram in your project area):

    Model fromscratch Fig1.png

  2. via the Tree Area by a single click with the right mouse button on the corresponding folder of the project:

    Model fromscratch Fig2.png

The platform will ask you to select the diagram type and specify the diagram name you want to create in the work space. In the following, the creation of a new “SBML model in SBGN notation” will be described.



Model fromscratch Fig3.png

Upon selecting the type of a diagram and clicking Ok button a new node New Diagram will appear in the Tree Area and the corresponding tab is opened in the Work Space to start the diagram creation.



Model fromscratch Fig3 1.png

A pathway diagram opened in the work space has a tool bar as shown below:

Model fromscratch Fig4.png

Adding a new element to the diagram

Building from BioModels Repository

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