Difference between revisions of "Analyze any DNA sequence, Fasta (workflow)"
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[[File:Analyze-any-DNA-sequence-Fasta-workflow-overview.png|400px]] | [[File:Analyze-any-DNA-sequence-Fasta-workflow-overview.png|400px]] | ||
== Description == | == Description == | ||
| − | This workflow is designed to analyze a DNA sequence for potential binding sites | + | This workflow is designed to analyze a DNA sequence for potential transcription factor binding sites. |
| − | + | '''The sequence should be in FASTA format.''' | |
| − | + | A sample data file for this workflow can be found here: data/Examples/Sample data/Data/DNA sequence formats/sample.embl | |
| − | '''Note''': File Extension is important for proper format recognition. If you have difficulties in uploading | + | The input file can be imported from your local computer, from the web or ftp server or from a respository within the platform. '''Note''': File Extension is important for proper format recognition during import. If you have difficulties in uploading your file (you see the message "Import failed"), export our examples and prepare your files accordingly.You can also drag and drop a raw sequence in FASTA format. |
| + | |||
| + | For free account users you can select between 4 different profiles of the GTRD database to search for TFBSs. Users with a valid TRANSFAC(R) license can select between >200 different Transfac matrix collections. | ||
| + | |||
| + | Please define a result file name. | ||
Latest revision as of 16:34, 12 March 2019
- Workflow title
- Analyze any DNA sequence, Fasta
- Provider
- geneXplain GmbH
[edit] Workflow overview
[edit] Description
This workflow is designed to analyze a DNA sequence for potential transcription factor binding sites.
The sequence should be in FASTA format.
A sample data file for this workflow can be found here: data/Examples/Sample data/Data/DNA sequence formats/sample.embl
The input file can be imported from your local computer, from the web or ftp server or from a respository within the platform. Note: File Extension is important for proper format recognition during import. If you have difficulties in uploading your file (you see the message "Import failed"), export our examples and prepare your files accordingly.You can also drag and drop a raw sequence in FASTA format.
For free account users you can select between 4 different profiles of the GTRD database to search for TFBSs. Users with a valid TRANSFAC(R) license can select between >200 different Transfac matrix collections.
Please define a result file name.
[edit] Parameters
- Input file (Fasta)
- Profile
- Result file
