Difference between revisions of "Mixture of normal components (analysis)"

Revision as of 12:20, 25 August 2015

Mixture of normal components for maximal IPS scores predicted in binding regions (singleTrack) of given tfClass (charts table is created)

Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
Is ChIP-Seq peaks – Is ChIP-Seq peaks (or merged binding regions)
TF class – TF class in Wingender classification (like '2.1.1.1.4')
Minimal region length – Minimal length of sequence region
Input track – Select input track (it must contain ChIP-Seq peaks or merged binding regions depending on input parameter 'Is ChIP-Seq peaks'
Matrix – Path to positional weight matrix
Type of site model – Type of site model
Number of mixture components – Number of mixture components
P-value threshold – P-value threshold
Max iterations – Maximal number of iterations for algorithm
Output table – Table with charts will be created in this location

@@ Line 23: / Line 23: @@
 * '''Type of site model''' – Type of site model
 * '''Number of mixture components''' – Number of mixture components
-* '''P-value''' – P-value
+* '''P-value threshold''' – P-value threshold
 * '''Max iterations''' – Maximal number of iterations for algorithm
 * '''Output table''' – Table with charts will be created in this location