Difference between revisions of "Mutation effect on sites (analysis)"
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* '''Profile''' – Predefined set of site models | * '''Profile''' – Predefined set of site models | ||
* '''Score difference''' – Minimal site score difference between reference and alternative sequences | * '''Score difference''' – Minimal site score difference between reference and alternative sequences | ||
| − | * ''' | + | * '''Site gain track''' – Resulting track with site gain events |
| + | * '''Site loss track''' – Resulting track with site gain events | ||
| + | * '''Summary table''' – Summary table giving site model frequencies per mutation | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 18:59, 13 February 2017
- Analysis title
Mutation effect on sites
- Provider
- Institute of Systems Biology
- Class
MutationEffectOnSites- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Find transcription factor binsing sites affected by mutations
Parameters:
- Input VCF track – Input track in VCF format
- Genome – Reference genome
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Profile – Predefined set of site models
- Score difference – Minimal site score difference between reference and alternative sequences
- Site gain track – Resulting track with site gain events
- Site loss track – Resulting track with site gain events
- Summary table – Summary table giving site model frequencies per mutation
