Difference between revisions of "Peak finders comparison (analysis)"
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* '''First folder containing ChIP-seq tracks''' – First folder containing ChIP-seq tracks (created by the 1-st peak finder) | * '''First folder containing ChIP-seq tracks''' – First folder containing ChIP-seq tracks (created by the 1-st peak finder) | ||
* '''Second folder containing ChIP-seq tracks''' – Second folder containing ChIP-seq tracks (created by the 2-nd peak finder) | * '''Second folder containing ChIP-seq tracks''' – Second folder containing ChIP-seq tracks (created by the 2-nd peak finder) | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 12:20, 25 August 2015
- Analysis title
Peak finders comparison
- Provider
- Institute of Systems Biology
- Class
PeakFindersComparison- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Comparison of two peak finders (for example, MACS and SISSRs): lengths and numbers of TF-binding regions are compared
[edit] Parameters:
- Species – Select a taxonomical species
- First folder containing ChIP-seq tracks – First folder containing ChIP-seq tracks (created by the 1-st peak finder)
- Second folder containing ChIP-seq tracks – Second folder containing ChIP-seq tracks (created by the 2-nd peak finder)
- Path to output folder – Output folder will be created under this location when it doesn't exist
