Difference between revisions of "Locations of best sites (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Input track''' – Select input | + | * '''Input track''' – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis) |
* '''Sequences collection''' – Select a source of nucleotide sequences | * '''Sequences collection''' – Select a source of nucleotide sequences | ||
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
Revision as of 16:17, 11 December 2014
- Analysis title
Locations of best sites
- Provider
- Institute of Systems Biology
- Class
BestSiteLocations- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Best sites: location of best sites in single chip-seq track; summit(yes/no)
Parameters:
- Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Is around summit – Is around summit
- Minimal region length – Minimal length of sequence region
- Types of site models – Select site models for comparative analysis
- Matrix – Path to positional weight matrix
- Path to output folder – Output folder will be created under this location
