Difference between revisions of "GTRD statistics"

Revision as of 17:30, 26 August 2016

5072 ChIP-seq experiments for 476 human and 257 mouse TFs that correspond to 542 TFClass classes.

@@ Line 1: / Line 1: @@
-'''2417''' ChIP-seq experiments for '''470''' distinct sequence specific transcription factors
+'''5072''' ChIP-seq experiments for '''476''' human and '''257''' mouse TFs that correspond to '''542''' TFClass classes.
 === Experiments by species ===
@@ Line 7: / Line 7: @@
 === Experiments by transcription factor ===
-'''4.07''' experiments per transcription factor in average.
+'''9.37''' experiments per transcription factor in average.
-'''284 (60%)''' transcription factors measured only in one experiment.
+% of TFs have been measured in more than one experiment.
 ==== Top 10 transcription factors ====
@@ Line 15: / Line 15: @@
 {| class="wikitable"
 |-
-!Transcription Factor
+! Transcription Factor !! Number of ChIP-seq experiments
-!ChIP-seq experiments count
 |-
-|CTCF <nowiki>[</nowiki>11<nowiki>]</nowiki>
+| CTCF || 282
-|195
 |-
-|c-Myc
+| AR || 117
-|45
 |-
-|Estrogen receptor α (ERα) (NR3A1)
+| PU.1 || 103
-|44
 |-
-|REST <nowiki>[</nowiki>1+7+1<nowiki>]</nowiki> (NRSF, XBR)
+| ERα || 92
-|37
 |-
-|C/EBPβ (NF-IL6-1)
+| c-Myc || 79
-|37
 |-
-|GATA-1 (GF-1, EryF1, NF-E1)
+| C/EBPβ || 74
-|33
 |-
-|NF-κB p65 (RelA)
+| NF-κB p65 || 70
-|30
 |-
-|Max
+| GR || 53
-|30
 |-
-|PU.1 (Spi-1)
+| REST || 51
-|29
 |-
-|Glucocorticoid receptor (GR) (NR3C1)
+| GATA-1 || 51
-|24
 |}
 === ChIP-seq peaks ===

Transcription Factor	Number of ChIP-seq experiments
CTCF	282
AR	117
PU.1	103
ERα	92
c-Myc	79
C/EBPβ	74
NF-κB p65	70
GR	53
REST	51
GATA-1	51