Difference between revisions of "ROC curves for best sites union (analysis)"
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* '''Minimal region length''' – Minimal length of sequence region | * '''Minimal region length''' – Minimal length of sequence region | ||
* '''% of best sites''' – Best sites percentage | * '''% of best sites''' – Best sites percentage | ||
| + | * '''Types of site models''' – Select site models for comparative analysis | ||
* '''Matrix''' – Path to positional weight matrix | * '''Matrix''' – Path to positional weight matrix | ||
* '''Filtration matrix''' – Path to filtration matrix | * '''Filtration matrix''' – Path to filtration matrix | ||
Revision as of 14:27, 18 November 2013
- Analysis title
ROC curves for best sites union
- Provider
- Institute of Systems Biology
- Class
BestSitesUnionROCCurves- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Best sites: ROC-curves; union of best sites in single chip-seq track; summit(yes/no); filtration (yes/no); matrix derivation.
Parameters:
- Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Is around summit – Is around summit
- Minimal region length – Minimal length of sequence region
- % of best sites – Best sites percentage
- Types of site models – Select site models for comparative analysis
- Matrix – Path to positional weight matrix
- Filtration matrix – Path to filtration matrix
- Path to output folder – Output folder will be created under this location
