Difference between revisions of "MicroRNA aligner (analysis)"
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* '''alignmentScoreThreshold''' – alignmentScoreThreshold | * '''alignmentScoreThreshold''' – alignmentScoreThreshold | ||
* '''threadCount''' – threadCount | * '''threadCount''' – threadCount | ||
| + | * '''unmapped''' – unmapped | ||
* '''alignment''' – alignment | * '''alignment''' – alignment | ||
Revision as of 18:38, 16 July 2013
- Analysis title
MicroRNA aligner
- Provider
- Institute of Systems Biology
- Class
MicroRNAAligner- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Aligns NGS reads to microRNA
Parameters:
- Input type – Type of input files
- csfasta – csfasta
- qualities – qualities
- fastq – fastq
- miRNASequences – miRNASequences
- adapter – adapter
- matchScore – matchScore
- mismatchPenalty – mismatchPenalty
- gapPenalty – gapPenalty
- alignmentScoreThreshold – alignmentScoreThreshold
- threadCount – threadCount
- unmapped – unmapped
- alignment – alignment
