Difference between revisions of "BioUML development roadmap"

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Revision as of 02:03, 15 June 2013

This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet. Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities. For this purpose, please, use the BioUML forum.

Plans for 2013

Release Description Date
v. 0.9.6
  • Modelling
    • Rule based modelling (implementation of BioNetGen approach)
    • Antimony support
    • Synchronisation between textual and graphical model representation (BioNetGen, Antimony)
  • New methods for analysis transcription factor binding sites
2013, August
v. 0.9.7
  • Server installation
    • repository - packages for Red Hat and Debian
    • Puppet cookbooks for server updates
  • Server
    • grid version - pilot task manager integration with SGE via DRMAA virtualisation
  • Web interface
    • mobile version (for web-browser)
    • web interface improvements diagrams - convenient for exchange and editing
  • NGS
    • ribo-seq
    • miRNA
    • rna-seq
  • Integration with genAbel
2013, Q4
v. 0.9.8
  • Server
    • grid version
  • Further NGS analyses improvements
2013, Q4

Other desired features

Component Features Priority
Core *Major refactoring: complex, macromolecule state, reaction
  • Parameters fitting - optimization process as a workflow
  • SED-ML as workflow
  • Save optimization results as the diagram state
  • SBGN-XML support
  • Implementation of OQL subset for access to databases via BioUML object model
moderate
Databases
  • KEGG support improvements:
  • Diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG)
  • Set up wizard
low
Misc.
  • SBRML support
  • Further integration with Matlab
low

See also

Retrieved from "https://wiki.biouml.org/index.php?title=BioUML_development_roadmap&oldid=4539"
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