Difference between revisions of "Linear Shifted Model (analysis)"
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* '''Regulator list''' – Table with regulators ID | * '''Regulator list''' – Table with regulators ID | ||
* '''Target list''' – Table with regulators ID | * '''Target list''' – Table with regulators ID | ||
| + | * '''P-value threshold''' – Only results with a P-value below this threshold will appear in the output | ||
| + | * '''Output table''' – Output table | ||
| + | * '''Maximum shift''' – Maximum shift between regulator and target | ||
| + | * '''Shift definition''' – Shift definition | ||
| + | * '''Include degradation''' – Include protein degradation in gene regulation model | ||
| + | * '''Target smothing type''' – Smoothing type for target gene profile | ||
| + | ** '''class''' – class | ||
| + | ** '''nameInParent''' – nameInParent | ||
| + | ** '''notificationEnabled''' – notificationEnabled | ||
| + | ** '''parameter''' – parameter | ||
| + | ** '''propagationEnabled''' – propagationEnabled | ||
| + | ** '''type''' – type | ||
| + | ** '''typeAsString''' – typeAsString | ||
| + | * '''Regulator smothing type''' – Smoothing type for regulator gene profile | ||
| + | ** '''class''' – class | ||
| + | ** '''nameInParent''' – nameInParent | ||
| + | ** '''notificationEnabled''' – notificationEnabled | ||
| + | ** '''parameter''' – parameter | ||
| + | ** '''propagationEnabled''' – propagationEnabled | ||
| + | ** '''type''' – type | ||
| + | ** '''typeAsString''' – typeAsString | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 18:00, 2 July 2013
- Analysis title
Linear Shifted Model
- Provider
- Institute of Systems Biology
- Class
LinearShiftedModelBuilding- Plugin
- biouml.plugins.genemodels (Gene expression models building)
Description
Linear Shifted Model of gene expression regulation
Parameters:
- Number of experiments – Number of experiments
- Experiments – Experiments
- Regulator list – Table with regulators ID
- Target list – Table with regulators ID
- P-value threshold – Only results with a P-value below this threshold will appear in the output
- Output table – Output table
- Maximum shift – Maximum shift between regulator and target
- Shift definition – Shift definition
- Include degradation – Include protein degradation in gene regulation model
- Target smothing type – Smoothing type for target gene profile
- class – class
- nameInParent – nameInParent
- notificationEnabled – notificationEnabled
- parameter – parameter
- propagationEnabled – propagationEnabled
- type – type
- typeAsString – typeAsString
- Regulator smothing type – Smoothing type for regulator gene profile
- class – class
- nameInParent – nameInParent
- notificationEnabled – notificationEnabled
- parameter – parameter
- propagationEnabled – propagationEnabled
- type – type
- typeAsString – typeAsString
