Difference between revisions of "Nonlinear Model (analysis)"
From BioUML platform
(Default analysis icon as separate file) |
(Automatic synchronization with BioUML) |
||
| Line 17: | Line 17: | ||
* '''Regulator list''' – Table with regulators ID | * '''Regulator list''' – Table with regulators ID | ||
* '''Target list''' – Table with regulators ID | * '''Target list''' – Table with regulators ID | ||
| + | * '''P-value threshold''' – Only results with a P-value below this threshold will appear in the output | ||
| + | * '''Output table''' – Output table | ||
| + | * '''Regulator smothing type''' – Smoothing type for regulator gene profile | ||
| + | ** '''class''' – class | ||
| + | ** '''nameInParent''' – nameInParent | ||
| + | ** '''notificationEnabled''' – notificationEnabled | ||
| + | ** '''parameter''' – parameter | ||
| + | ** '''propagationEnabled''' – propagationEnabled | ||
| + | ** '''type''' – type | ||
| + | ** '''typeAsString''' – typeAsString | ||
| + | * '''Optimization method''' – Optimization method | ||
| + | ** '''class''' – class | ||
| + | ** '''delta''' – delta | ||
| + | ** '''nameInParent''' – nameInParent | ||
| + | ** '''notificationEnabled''' – notificationEnabled | ||
| + | ** '''numOfIterations''' – numOfIterations | ||
| + | ** '''propagationEnabled''' – propagationEnabled | ||
| + | ** '''survivalSize''' – survivalSize | ||
| + | ** '''type''' – type | ||
| + | ** '''typeAsString''' – typeAsString | ||
| + | * '''Best regulator quantity''' – Number of best regulators for each target in output | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 18:00, 2 July 2013
- Analysis title
Nonlinear Model
- Provider
- Institute of Systems Biology
- Class
NonLinearModelBuilding- Plugin
- biouml.plugins.genemodels (Gene expression models building)
Description
Nonlinear model of gene regulation
Parameters:
- Number of experiments – Number of experiments
- Experiments – Experiments
- Regulator list – Table with regulators ID
- Target list – Table with regulators ID
- P-value threshold – Only results with a P-value below this threshold will appear in the output
- Output table – Output table
- Regulator smothing type – Smoothing type for regulator gene profile
- class – class
- nameInParent – nameInParent
- notificationEnabled – notificationEnabled
- parameter – parameter
- propagationEnabled – propagationEnabled
- type – type
- typeAsString – typeAsString
- Optimization method – Optimization method
- class – class
- delta – delta
- nameInParent – nameInParent
- notificationEnabled – notificationEnabled
- numOfIterations – numOfIterations
- propagationEnabled – propagationEnabled
- survivalSize – survivalSize
- type – type
- typeAsString – typeAsString
- Best regulator quantity – Number of best regulators for each target in output
