Difference between revisions of "MicroRNA aligner (analysis)"
From BioUML platform
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==== Parameters: ==== | ==== Parameters: ==== | ||
| + | * '''Input type''' – Type of input files | ||
* '''csfasta''' – csfasta | * '''csfasta''' – csfasta | ||
* '''qualities''' – qualities | * '''qualities''' – qualities | ||
| + | * '''fastq''' – fastq | ||
* '''miRNASequences''' – miRNASequences | * '''miRNASequences''' – miRNASequences | ||
* '''adapter''' – adapter | * '''adapter''' – adapter | ||
| + | * '''matchScore''' – matchScore | ||
* '''mismatchPenalty''' – mismatchPenalty | * '''mismatchPenalty''' – mismatchPenalty | ||
* '''gapPenalty''' – gapPenalty | * '''gapPenalty''' – gapPenalty | ||
Revision as of 18:12, 9 July 2013
- Analysis title
MicroRNA aligner
- Provider
- Institute of Systems Biology
- Class
MicroRNAAligner- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Aligns NGS reads to microRNA
Parameters:
- Input type – Type of input files
- csfasta – csfasta
- qualities – qualities
- fastq – fastq
- miRNASequences – miRNASequences
- adapter – adapter
- matchScore – matchScore
- mismatchPenalty – mismatchPenalty
- gapPenalty – gapPenalty
- alignmentScoreThreshold – alignmentScoreThreshold
- threadCount – threadCount
- alignment – alignment
