Difference between revisions of "Track coverage (analysis)"
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* '''Sequences''' – Collection of sequences | * '''Sequences''' – Collection of sequences | ||
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
| − | ** '''Sequence collection''' – | + | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected |
| − | + | ||
* '''Window size''' – Size of the window to average the coverage | * '''Window size''' – Size of the window to average the coverage | ||
* '''Step''' – Number of bp to step (at least 1000) | * '''Step''' – Number of bp to step (at least 1000) | ||
Revision as of 17:16, 6 June 2013
- Analysis title
- File:BSA-Track-coverage-icon.png Track coverage
- Provider
- Institute of Systems Biology
- Class
TrackCoverageAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Calculates the coverage of given track
Parameters:
- Input track – Track to calculate coverage for
- Sequences – Collection of sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Window size – Size of the window to average the coverage
- Step – Number of bp to step (at least 1000)
- Output empty intervals – When checked, intervals without single site will appear in the output table as well
- Output table – Path to the output table
