Difference between revisions of "Track coverage (analysis)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Mistaken file names update reverted) |
||
| Line 1: | Line 1: | ||
;Analysis title | ;Analysis title | ||
| − | :[[File:Track-coverage | + | :[[File:BSA-Track-coverage-icon.png]] Track coverage |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
Revision as of 12:40, 16 May 2013
- Analysis title
- File:BSA-Track-coverage-icon.png Track coverage
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Calculates the coverage of given track
Parameters:
- Input track – Track to calculate coverage for
- Sequences – Collection of sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Sequence collection
- Genome ID string – Something like 'hg18' or 'mm6'
- Window size – Size of the window to average the coverage
- Step – Number of bp to step (at least 1000)
- Output empty intervals – When checked, intervals without single site will appear in the output table as well
- Output table – Path to the output table
