Difference between revisions of "DiChIPMunk (analysis)"
From BioUML platform
(Provider information added) |
(Adding provider-specific categories) |
||
| Line 2: | Line 2: | ||
:DiChIPMunk | :DiChIPMunk | ||
;Provider | ;Provider | ||
| − | :[[ | + | :[[Autosome.Ru]] |
==== Description ==== | ==== Description ==== | ||
| Line 28: | Line 28: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
[[Category:ChIPMunk (analyses group)]] | [[Category:ChIPMunk (analyses group)]] | ||
| + | [[Category:Autosome.Ru analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Revision as of 11:07, 19 April 2013
- Analysis title
- DiChIPMunk
- Provider
- Autosome.Ru
Description
This analysis allows you to create di-nucleotide motifs from Chip-Seq data.
It identifies the motif with the maximum Discrete Information Content in a set of DNA sequences.
Parameters:
- Input sequences – Collection containing input reads.
- Start length – Start length of the matrix
- Stop length – Stop length of the matrix (less or equal than start length)
- Number of threads (expert) – Number of concurrent threads when processing
- Step limit (expert) – Step limit
- Try limit (expert) – Try limit
- Local background (expert) – If checked, local background estimation is used. Otherwise uniform background estimation is used
- ZOOPS factor (expert) – Zero-or-one-occurence-per-sequence factor
- Motif shape (expert) – Motif shape
- Use peak profiles (expert) – Whether to use peak profiles (if available)
- Output matrix library – Path to the matrix library to put matrix into (will be created if not specified)
- Matrix name – Name of created matrix
More about DiChIPMunk at: http://autosome.ru/dichipmunk/
