Difference between revisions of "Cis-module sets near given genes (analysis)"
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* '''Minimal size''' – Cis-regulatory module will be missed if its size is less than this threshold | * '''Minimal size''' – Cis-regulatory module will be missed if its size is less than this threshold | ||
* '''Maximal distance between cis-modules and genes''' – Maximal distance between cis-regulatory modules and genes | * '''Maximal distance between cis-modules and genes''' – Maximal distance between cis-regulatory modules and genes | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 12:19, 25 August 2015
- Analysis title
Cis-module sets near given genes
- Provider
- Institute of Systems Biology
- Class
CisModuleSetsNearGenes- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Frequencies of TF-classes in two sets of cis-regulatory modules that locate near given genes
[edit] Parameters:
- Input track – Select input track (it has to contain cis-reulatory modules; in particular, it can be the result of 'Cis-module identification' analysis)
- Path to table1 with 1-st gene set – Path to table with 1-st gene set (table must contain the 'Gene_ID' column)
- Path to table2 with 2-nd gene set – Path to table with 2-nd gene set (table must contain the 'Gene_ID' column)
- Path to table with genes – Path to table with genes
- Minimal size – Cis-regulatory module will be missed if its size is less than this threshold
- Maximal distance between cis-modules and genes – Maximal distance between cis-regulatory modules and genes
- Path to output folder – Output folder will be created under this location when it doesn't exist
