Difference between revisions of "Prepare GTF annotation (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:RNA-seq-Prepare-GTF-annotation-icon.png]] Prepare GTF annotation |
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
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==== Description ==== | ==== Description ==== | ||
| − | Prepare GTF annotation file from Ensembl database, this GTF can be used by Cufflinks | + | Prepare GTF annotation file from Ensembl database, this GTF can be used by Cufflinks. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:RNA-seq (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Prepare GTF annotation
- Provider
- Institute of Systems Biology
- Class
PrepareGTFAnnotation- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
[edit] Description
Prepare GTF annotation file from Ensembl database, this GTF can be used by Cufflinks.
[edit] Parameters:
- Ensembl database – Ensembl database to use
- TSS distance – Maximal distance between neighboring transcription start sites in cluster
- TSS groups – Table describing TSS groups
- Resulting annotation – Resulting annotation of genome in GTF format
