Difference between revisions of "Map Transfac sites to genome (analysis)"
From BioUML platform
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* '''Transfac''' – Path to transfac database | * '''Transfac''' – Path to transfac database | ||
* '''Ensembl database''' – Ensembl database | * '''Ensembl database''' – Ensembl database | ||
| + | * '''Search near genes''' – If TRANSFAC(R) do not provide absolute genomic coordinates, try to find site sequence near the linked genes | ||
* '''Result''' – Resulting Transfac sites mapped to genome | * '''Result''' – Resulting Transfac sites mapped to genome | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Unclassified (analyses group)]] |
[[Category:GeneXplain analyses]] | [[Category:GeneXplain analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Map Transfac sites to genome
- Provider
- geneXplain GmbH
- Class
MapSitesToGenome- Plugin
- biouml.plugins.transfac (Support for Transfac database)
[edit] Description
Map Transfac sites to genome
[edit] Parameters:
- Transfac – Path to transfac database
- Ensembl database – Ensembl database
- Search near genes – If TRANSFAC(R) do not provide absolute genomic coordinates, try to find site sequence near the linked genes
- Result – Resulting Transfac sites mapped to genome
