Difference between revisions of "Process track with sites (analysis)"

Latest revision as of 18:15, 9 December 2020

This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.

Source track – Track you want to process
Sequences – Sequences to use
Shrink sites to zero length? – When shrink mode is selected, the sites are shrinked to zero length before further processing
Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
Minimal site size – Sites shorter than specified size will be removed from output
Output track – Path for processed track

@@ Line 1: / Line 1: @@
-This analysis allows you to enlarge/shrink sites on the track, merge overlapping sites or remove too short sites
+;Analysis title
+:[[File:Operations-with-genomic-tracks-Process-track-with-sites-icon.png]] Process track with sites
+;Provider
+:[[Institute of Systems Biology]]
+;Class
+:{{Class|ru.biosoft.bsa.analysis.ProcessTrack}}
+;Plugin
+:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
+==== Description ====
+This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.
 ==== Parameters: ====
@@ Line 5: / Line 15: @@
 * '''Source track''' – Track you want to process
 * '''Sequences''' – Sequences to use
+* '''Shrink sites to zero length?''' – When shrink mode is selected, the sites are shrinked to zero length before further processing
 * '''Enlarge sites at start''' – Use positive numbers to enlarge and negative to shrink
 * '''Enlarge sites at end''' – Use positive numbers to enlarge and negative to shrink
@@ Line 13: / Line 24: @@
 [[Category:Analyses]]
-[[Category:BSA (analyses group)]]
+[[Category:Operations with genomic tracks (analyses group)]]
+[[Category:ISB analyses]]
 [[Category:Autogenerated pages]]