Difference between revisions of "IPS prediction (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] IPS prediction |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.IPSPredictionAnalysis}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]] |
==== Description ==== | ==== Description ==== | ||
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** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ||
* '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks | * '''Folder containing ChIP-seq tracks''' – Folder containing ChIP-seq tracks | ||
| − | * '''Matrix''' – Path to | + | * '''Matrix''' – Path to frequency matrix |
* '''Species''' – Select a taxonomical species | * '''Species''' – Select a taxonomical species | ||
* '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | * '''TF class''' – TF class in Wingender classification (like <nowiki>'</nowiki>2.1.1.1.4<nowiki>'</nowiki>) | ||
Latest revision as of 19:00, 13 February 2017
- Analysis title
IPS prediction
- Provider
- Institute of Systems Biology
- Class
IPSPredictionAnalysis- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
IPS-prediction and tag density
[edit] Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Matrix – Path to frequency matrix
- Species – Select a taxonomical species
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Output table – Table with charts will be created in this location
