Difference between revisions of "Merge binding regions for cell-lines (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Merge binding regions for cell-lines |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
;Class | ;Class | ||
| − | :{{Class| | + | :{{Class|biouml.plugins.bindingregions.analysis.MergeCellLineBindingRegions}} |
;Plugin | ;Plugin | ||
| − | :[[ | + | :[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]] |
==== Description ==== | ==== Description ==== | ||
| Line 20: | Line 20: | ||
* '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column) | * '''Cell line synonyms table''' – Cell line synonyms table (must contain the <nowiki>'</nowiki>newNameOfCellLine<nowiki>'</nowiki> column) | ||
* '''Chromosome gaps table''' – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis) | * '''Chromosome gaps table''' – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis) | ||
| − | * '''Path to output folder''' – Output folder will be created under this location | + | * '''Path to output folder''' – Output folder will be created under this location when it doesn<nowiki>'</nowiki>t exist |
[[Category:Analyses]] | [[Category:Analyses]] | ||
Latest revision as of 12:20, 25 August 2015
- Analysis title
Merge binding regions for cell-lines
- Provider
- Institute of Systems Biology
- Class
MergeCellLineBindingRegions- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
[edit] Description
Create cell-specific tracks with merged binding regions (creation of tables: 'bindingRegions_in_[CellLine*]')
[edit] Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Cell line synonyms table – Cell line synonyms table (must contain the 'newNameOfCellLine' column)
- Chromosome gaps table – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis)
- Path to output folder – Output folder will be created under this location when it doesn't exist
