Difference between revisions of "Motif quality analysis"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Motif-discovery-Motif-quality-analysis-icon.png]] Motif quality analysis |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.motifquality.MotifQualityAnalysis}} | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Compute ROC curve of motif model | + | Compute ROC curve of motif model. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 19: | Line 21: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Motif discovery (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Motif quality analysis
- Provider
- Institute of Systems Biology
- Class
MotifQualityAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Compute ROC curve of motif model.
[edit] Parameters:
- Sequences – Track or sequence with motifs
- Site model – Site model
- Number of points – Number of points where sensitivity and FDR will be computed
- Shuffle count – How many times seqeunce letters will be shuffled for FDR estimation
- Seed – Seed for random number generator
- Output path – Path to store results
