Difference between revisions of "Gene features (analysis)"
From BioUML platform
(Adding provider-specific categories) |
(Automatic synchronization with BioUML) |
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;Analysis title | ;Analysis title | ||
| − | :Gene features | + | :[[File:Default-analysis-icon.png]] Gene features |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|biouml.plugins.gtrd.analysis.GeneFeatures}} | ||
| + | ;Plugin | ||
| + | :[[Biouml.plugins.gtrd (plugin)|biouml.plugins.gtrd (GTRD)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Extract gene features from GTRD | + | Extract gene features from GTRD. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 13: | Line 17: | ||
* '''maxTSSDistance''' – maxTSSDistance | * '''maxTSSDistance''' – maxTSSDistance | ||
* '''scoreProperty''' – scoreProperty | * '''scoreProperty''' – scoreProperty | ||
| + | * '''useSummit''' – useSummit | ||
| + | * '''intervals''' – intervals | ||
* '''experimentsPath''' – experimentsPath | * '''experimentsPath''' – experimentsPath | ||
* '''otherSites''' – otherSites | * '''otherSites''' – otherSites | ||
* '''outputPath''' – outputPath | * '''outputPath''' – outputPath | ||
| + | * '''geneCentricOutputPath''' – geneCentricOutputPath | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category:GTRD (analyses group)]] | + | [[Category:GTRD build (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
Gene features
- Provider
- Institute of Systems Biology
- Class
GeneFeatures- Plugin
- biouml.plugins.gtrd (GTRD)
[edit] Description
Extract gene features from GTRD.
[edit] Parameters:
- specie – specie
- cellLine – cellLine
- maxTSSDistance – maxTSSDistance
- scoreProperty – scoreProperty
- useSummit – useSummit
- intervals – intervals
- experimentsPath – experimentsPath
- otherSites – otherSites
- outputPath – outputPath
- geneCentricOutputPath – geneCentricOutputPath
