Difference between revisions of "BioUML - systems biology"
From BioUML platform
(→Systems biology) |
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== Systems biology == | == Systems biology == | ||
| − | * [[Systems biology| | + | * Tutorial |
| − | ** [[ | + | ** [[Systems biology - Get started|Getting started]] |
| − | ** [[ | + | ** [[Systems biology - manual model construction|Manual model construction]] |
| − | * [[Systems biology| | + | ** [[Systems biology - model import|Model import]] |
| − | ** [[ | + | ** [[Systems biology - model layout|Model layout]] |
| + | ** [[Systems biology - basic model editing|Basic model editing]] | ||
| + | ** [[Systems biology - model export|Model export]] | ||
| + | ** [[Systems biology - model simulation|Model simulation]] | ||
| + | ** [[Manual parameter fitting]] | ||
| + | ** [[Parameter identifiability example|Parameter identifiability]] | ||
| + | ** [[Sensitivity analysis example|Sensitivity analysis]] | ||
| + | ** [[Metabolic control analysis example|Metabolic control analysis]] | ||
| + | ** [[Quasi-steady-state analysis example|Quasi-steady-state analysis]] | ||
| + | ** [[Optimization examples|Parameters fitting]] | ||
| + | ** [[Flux balance analysis|Flux balance analysis]] | ||
| + | |||
| + | |||
| + | * Databases | ||
| + | ** [[...]] | ||
|valign="top" width="33%"| | |valign="top" width="33%"| | ||
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== Quick start == | == Quick start == | ||
* [[New BioStore|Create project via BioStore]] | * [[New BioStore|Create project via BioStore]] | ||
| − | * Import | + | * [[Import (extension point)|Import]] |
| − | ** [[SBML]] | + | ** [[SBML models]] |
| − | ** [[SBGN]] | + | ** [[SBGN models]] |
| − | * Create model | + | * [[Diagram document|Create model]] |
| − | ** [[Diagram types]] | + | ** [[Diagram type|Diagram types]] |
** [[SBGN process diagram]] | ** [[SBGN process diagram]] | ||
** [[Antimony]] | ** [[Antimony]] | ||
** [[BioNetGen]] | ** [[BioNetGen]] | ||
* Model simulation | * Model simulation | ||
| − | ** [[Solvers]] | + | ** [[Simulation|Solvers]] |
** [[Plots]] | ** [[Plots]] | ||
| − | + | * [[Optimization document|Parameters fitting]] | |
| − | + | * [[Flux balance analysis]] | |
| − | + | * [[Export (extension point)|Export]] | |
| − | + | ||
| − | * [[Export]] | + | |
|} | |} | ||
Latest revision as of 11:53, 21 March 2022
[edit] Systems biology
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[edit] Quick start |
