Difference between revisions of "Chromosome enrichment (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :Chromosome enrichment | + | :[[File:Default-analysis-icon.png]] Chromosome enrichment |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.ChromosomeEnrichment}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Find chromosomes enriched with given genes | + | Find chromosomes enriched with given genes. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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* '''Genome''' – Genome | * '''Genome''' – Genome | ||
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
| − | ** '''Sequence collection''' – | + | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected |
** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ** '''Genome ID string''' – Something like <nowiki>'</nowiki>hg18<nowiki>'</nowiki> or <nowiki>'</nowiki>mm6<nowiki>'</nowiki> | ||
* '''Output table''' – Output table | * '''Output table''' – Output table | ||
| Line 18: | Line 22: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Unclassified (analyses group)]] |
| + | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Chromosome enrichment
- Provider
- Institute of Systems Biology
- Class
ChromosomeEnrichment- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Find chromosomes enriched with given genes.
[edit] Parameters:
- Input genes – Input genes
- Genome – Genome
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Genome ID string – Something like 'hg18' or 'mm6'
- Output table – Output table
- Output image – Output image
