Difference between revisions of "Convert site search summary (analysis)"
From BioUML platform
m (Protected "Convert site search summary (analysis)": Autogenerated page ([edit=sysop] (indefinite))) |
(Automatic synchronization with BioUML) |
||
| Line 1: | Line 1: | ||
;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:TF-binding-site-search-Convert-site-search-summary-icon.png]] Convert site search summary |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| Line 9: | Line 9: | ||
==== Description ==== | ==== Description ==== | ||
| − | Convert site search summary | + | Convert site search summary. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 16: | Line 16: | ||
* '''Species''' – Select human, mouse or rat species | * '''Species''' – Select human, mouse or rat species | ||
* '''Output type''' – Select type of identifiers for the resulting table | * '''Output type''' – Select type of identifiers for the resulting table | ||
| + | * '''Ignore empty values''' – Ignore empty values during aggregator work | ||
* '''Numerical value treatment rule''' – Select one of the rules to treat values in the numerical columns of the table when several rows are merged into a single one. | * '''Numerical value treatment rule''' – Select one of the rules to treat values in the numerical columns of the table when several rows are merged into a single one. | ||
*:In cases of "average", "average w/o 20% outliers" and "sum", the selected rule is applied to all numerical columns of the table. In cases of "minimum", "maximum" and "extreme" a new option appears bellow which request user to select a "Leading column". The chosen rule is applied then to the values in the selected Leading column (e.g. in the Leading column the maximum value is computed among all the merged rows). All other numerical values of the table will be taken from that row which corresponds to the selected value in the leading column. | *:In cases of "average", "average w/o 20% outliers" and "sum", the selected rule is applied to all numerical columns of the table. In cases of "minimum", "maximum" and "extreme" a new option appears bellow which request user to select a "Leading column". The chosen rule is applied then to the values in the selected Leading column (e.g. in the Leading column the maximum value is computed among all the merged rows). All other numerical values of the table will be taken from that row which corresponds to the selected value in the leading column. | ||
| Line 22: | Line 23: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:TF binding site search (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Convert site search summary
- Provider
- Institute of Systems Biology
- Class
SiteSearchModelSummary- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Convert site search summary.
[edit] Parameters:
- Result of site search analysis – Previously obtained result of site search; must contain summary table with p-value column
- Species – Select human, mouse or rat species
- Output type – Select type of identifiers for the resulting table
- Ignore empty values – Ignore empty values during aggregator work
- Numerical value treatment rule – Select one of the rules to treat values in the numerical columns of the table when several rows are merged into a single one.
- In cases of "average", "average w/o 20% outliers" and "sum", the selected rule is applied to all numerical columns of the table. In cases of "minimum", "maximum" and "extreme" a new option appears bellow which request user to select a "Leading column". The chosen rule is applied then to the values in the selected Leading column (e.g. in the Leading column the maximum value is computed among all the merged rows). All other numerical values of the table will be taken from that row which corresponds to the selected value in the leading column.
- Leading column – Select the column with numerical values to apply one of the rules described above
- Output table – Path to store the resulting table in the tree
