Difference between revisions of "Convert genomic BAM to transcriptomic (analysis)"
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==== Description ==== | ==== Description ==== | ||
| − | Convert BAM alignments on genome to alignments on transcriptome | + | Convert BAM alignments on genome to alignments on transcriptome. |
==== Parameters: ==== | ==== Parameters: ==== | ||
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[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Ribosome profiling (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Convert genomic BAM to transcriptomic
- Provider
- Institute of Systems Biology
- Class
GenomicAlignmentsToTranscriptomic- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
[edit] Description
Convert BAM alignments on genome to alignments on transcriptome.
[edit] Parameters:
- Input bam track – Input bam track
- Transcripts – Transcripts
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- Convert to CDS offsets – Convert to CDS offsets
- CDS overhangs – CDS overhangs
- Output bam track – Output bam track
- Output sequences – Output sequences
