Difference between revisions of "Process track with sites (analysis)"
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Operations-with-genomic-tracks-Process-track-with-sites-icon.png]] Process track with sites |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.ProcessTrack}} | ||
| + | ;Plugin | ||
| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | This analysis | + | This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 11: | Line 15: | ||
* '''Source track''' – Track you want to process | * '''Source track''' – Track you want to process | ||
* '''Sequences''' – Sequences to use | * '''Sequences''' – Sequences to use | ||
| + | * '''Shrink sites to zero length?''' – When shrink mode is selected, the sites are shrinked to zero length before further processing | ||
* '''Enlarge sites at start''' – Use positive numbers to enlarge and negative to shrink | * '''Enlarge sites at start''' – Use positive numbers to enlarge and negative to shrink | ||
* '''Enlarge sites at end''' – Use positive numbers to enlarge and negative to shrink | * '''Enlarge sites at end''' – Use positive numbers to enlarge and negative to shrink | ||
| Line 19: | Line 24: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Operations with genomic tracks (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Process track with sites
- Provider
- Institute of Systems Biology
- Class
ProcessTrack- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.
[edit] Parameters:
- Source track – Track you want to process
- Sequences – Sequences to use
- Shrink sites to zero length? – When shrink mode is selected, the sites are shrinked to zero length before further processing
- Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
- Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
- Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
- Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
- Minimal site size – Sites shorter than specified size will be removed from output
- Output track – Path for processed track
