Difference between revisions of "Compute coverage by window (analysis)"

Latest revision as of 18:15, 9 December 2020

Analysis title

Compute coverage by window

Provider

Institute of Systems Biology

Class

TrackCoverageAnalysis

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Calculates the coverage of given track in fixed windows.

[edit] Parameters:

• Input track – Track to calculate coverage for
• Sequences – Collection of sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Window size – Size of the window to average the coverage
• Step – Number of bp to step (at least 1000)
• Output empty intervals – When checked, intervals without single site will appear in the output table as well
• Output table – Path to the output table