Difference between revisions of "Parameter identifiability (optimization) (analysis)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
||
| Line 9: | Line 9: | ||
==== Description ==== | ==== Description ==== | ||
| − | Parameter identifiability which uses optimization as input | + | Parameter identifiability which uses optimization as input. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * '''Optimization''' – | + | * '''Optimization''' – A path to the optimization document. |
| − | * ''' | + | * '''Parameter values''' – A path to the table containing the fitted parameter values. If this path is skipped, the values stored in the optimization document will be used as the start values of the analysis. |
| − | * ''' | + | * '''Parameters''' (expert) – Parameters to check identifiability. |
* '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction) | * '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction) | ||
* '''Maximal deviation''' – Maximal deviation from initial objective function value (delta) | * '''Maximal deviation''' – Maximal deviation from initial objective function value (delta) | ||
| + | * '''Save solutions''' – Should solutions found by the analysis be saved? | ||
* '''Plot element type''' (expert) – Type of created result plot elements | * '''Plot element type''' (expert) – Type of created result plot elements | ||
* '''Output path''' – Path to the output table | * '''Output path''' – Path to the output table | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Differential algebraic equations (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
Parameter identifiability (optimization)
- Provider
- Institute of Systems Biology
- Class
IdentifiabilityOnOptimizationAnalysis- Plugin
- biouml.plugins.optimization (Optimization plug-in)
[edit] Description
Parameter identifiability which uses optimization as input.
[edit] Parameters:
- Optimization – A path to the optimization document.
- Parameter values – A path to the table containing the fitted parameter values. If this path is skipped, the values stored in the optimization document will be used as the start values of the analysis.
- Parameters (expert) – Parameters to check identifiability.
- Maximum identifiability steps – Maximum number of steps during parameter identifiability testing (in one direction)
- Maximal deviation – Maximal deviation from initial objective function value (delta)
- Save solutions – Should solutions found by the analysis be saved?
- Plot element type (expert) – Type of created result plot elements
- Output path – Path to the output table
