Difference between revisions of "Add genes from CMA (analysis)"
From BioUML platform
(Automatic synchronization with BioUML) |
(Automatic synchronization with BioUML) |
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:[[Biosoft]] | :[[Biosoft]] | ||
;Class | ;Class | ||
| − | :{{Class|biouml.plugins.genomeenhancer.AddGenesAnalysis}} | + | :{{Class|biouml.plugins.genomeenhancer.analysis.AddGenesAnalysis}} |
;Plugin | ;Plugin | ||
:[[Biouml.plugins.genomeenhancer (plugin)|biouml.plugins.genomeenhancer (Genome Enhancer)]] | :[[Biouml.plugins.genomeenhancer (plugin)|biouml.plugins.genomeenhancer (Genome Enhancer)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Add genes from CMA result | + | Add genes from CMA result to diagram. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 15: | Line 15: | ||
* '''Input Diagram''' – Input Diagram. | * '''Input Diagram''' – Input Diagram. | ||
* '''CMA result''' – CMA result. | * '''CMA result''' – CMA result. | ||
| + | * '''Column with genes''' – Column with genes ids. | ||
* '''Profile''' – Profile. | * '''Profile''' – Profile. | ||
* '''Full model track''' – Full model track | * '''Full model track''' – Full model track | ||
| − | * '''Sequences''' – | + | * '''Sequences''' – Result of Annotate Track with Genes analysis (if not set automatically) |
| − | * '''Add Only producing genes''' – Add only genes producing proteins which are already in the | + | * '''Add Only producing genes''' – Add only genes producing proteins which are already in the diagram. |
* '''Add Only regulated genes''' – Add only genes which are regulated by ptoteins from diagram. | * '''Add Only regulated genes''' – Add only genes which are regulated by ptoteins from diagram. | ||
* '''Genes limit''' – Genes limit. | * '''Genes limit''' – Genes limit. | ||
| + | * '''Layout gene clusters''' – It is recommended to switch layout off if number of genes is large. | ||
| + | * '''Layout model''' – It is recommended to switch layout off if number of proteins is large. | ||
* '''Output Diagram''' – Output Diagram. | * '''Output Diagram''' – Output Diagram. | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Composite module analyses (analyses group)]] |
[[Category:Biosoft analyses]] | [[Category:Biosoft analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:14, 9 December 2020
- Analysis title
Add genes from CMA
- Provider
- Biosoft
- Class
AddGenesAnalysis- Plugin
- biouml.plugins.genomeenhancer (Genome Enhancer)
[edit] Description
Add genes from CMA result to diagram.
[edit] Parameters:
- Input Diagram – Input Diagram.
- CMA result – CMA result.
- Column with genes – Column with genes ids.
- Profile – Profile.
- Full model track – Full model track
- Sequences – Result of Annotate Track with Genes analysis (if not set automatically)
- Add Only producing genes – Add only genes producing proteins which are already in the diagram.
- Add Only regulated genes – Add only genes which are regulated by ptoteins from diagram.
- Genes limit – Genes limit.
- Layout gene clusters – It is recommended to switch layout off if number of genes is large.
- Layout model – It is recommended to switch layout off if number of proteins is large.
- Output Diagram – Output Diagram.
