Difference between revisions of "GTRD statistics"
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=== ChIP-seq === | === ChIP-seq === | ||
| − | {| | + | {| class="wikitable" |
! Species | ! Species | ||
! ChIP-seq experiments | ! ChIP-seq experiments | ||
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|} | |} | ||
| − | === DNase-seq | + | === DNase-seq === |
| − | {| | + | {| class="wikitable" |
!width="25%"| Species | !width="25%"| Species | ||
!width="25%"| DNase-seq experiments | !width="25%"| DNase-seq experiments | ||
Latest revision as of 12:10, 8 November 2019
[edit] Statistics for version 19.10 (version 19.04)
[edit] ChIP-seq
| Species | ChIP-seq experiments | Transcription factors | ChIP-seq reads ×109 |
Reads aligned ×109 |
ChIP-seq peaks ×106 |
Clusters ×106 |
Metaclusters ×106 |
|---|---|---|---|---|---|---|---|
| Arabidopsis thaliana | 454 (424) | 124 (120) | 25.3 (24.2) | 15.1 (14.4) | 4.8 (2.9) | 3.8 (2.2) | 0.44 (0.38) |
| Caenorhabditis elegans | 1558 (1508) | 331 (326) | 30.5 (26.6) | 21.5 (19.1) | 6.2 (3.4) | 4.5 (2.4) | 0.5 (0.4) |
| Danio rerio | 55 (51) | 21 (20) | 2.4 (2.1) | 1,2 (1.1) | 2.2 (2.1) | 2.3 (1.9) | 0.28 (0.26) |
| Drosophila melanogaster | 2366 (2182) | 569 (552) | 79.8 (74.4) | 56.8 (53.1) | 19.3 (10.5) | 5.4 (7.4) | 0.7 (1.4) |
| Homo sapiens | 13515 (10675) | 1339 (1158) | 783.0 (616.3) | 606.9 (483.3) | 1102.3 (818) | 703.6 (505.2) | 91.7 (60.5) |
| Mus musculus | 10728 (8055) | 738 (584) | 577.5 (403.4) | 381.9 (273.1) | 943.7 (699.8) | 598.8 (431.6) | 80.8 (56.0) |
| Rattus norvegicus | 187 (153) | 36 (29) | 9.5 (7.5) | 6.1 (4.8) | 11.0 (9.3) | 9.2 (7.6) | 1.4 (1.1) |
| Saccharomyces cerevisiae | 1581 (1364) | 161 (142) | 25.8 (20.3) | 19.2 (15.5) | 1.62 (0.66) | 0.84 (0.3) | 0,056 (0.038) |
| Schizosaccharomyces pombe | 226 (222) | 57 (55) | 3.5 (3.4) | 2.6 (2.6) | 0.249 (0.11) | 0.18 (0.09) | 0.014 (0.011) |
| Total | 30670 (24634) | 3376 (2986) | 1537.3 (1178.3) | 1111.3 (867.1) | 2091.3 (1546.7) | 1328.6 (958.7) | 175.9 (120.1) |
[edit] DNase-seq
| Species | DNase-seq experiments | DNase I hypersensitive sites (DHSs) ×106 |
DNase-seq footprints (FDR<0.01) ×106 |
|---|---|---|---|
| Homo sapiens | 1482 (739) |
|
|
| Mus musculus | 103 (103) |
|
|
| Total | 1585 (842) |
|
|
