Difference between revisions of "Tools Comparison"

From BioUML platform
Jump to: navigation, search
Line 3: Line 3:
  
 
{| class="wikitable"
 
{| class="wikitable"
−
|+Simulation and modeling tools
+
|+
−
|Name
+
|
−
|Standards
+
−
|Capabilities
+
−
|Formalisms
+
−
|Type
+
−
|-
+
 
|BioUML
 
|BioUML
 +
|COPASI
 +
|iBioSim
 +
|CellDesigner
 +
|Tellurium
 +
|Morpheus
 +
|-
 +
|'''Capabilities'''
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|Standalone\web
 
 
|-
 
|-
−
|COPASI
+
|Model creation
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|Standalone
 
 
|-
 
|-
−
|iBioSim
+
|Simulation
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Parameter fitting
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Model analysis
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Database access
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|'''Formalism'''
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|ODE
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Stochastic
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Algebraic
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Discrete
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Modular modeling
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Agent-based
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Rule-based
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Population-based
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|'''Standards'''
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|SBML
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|SBGN
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|SedML
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Antimony
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Bionetgen
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|BioPAX
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|'''Availability'''
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Windows
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Linux
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|MacOS
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|Web application
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|
 +
|-
 +
|'''Platform'''
 +
|
 +
|
 +
|
 
|
 
|
 
|
 
|
 
|
 
|
−
|Standalone
 
 
|}
 
|}

Revision as of 21:40, 2 May 2019

Here we collect information about similar software and their features in comparison with BioUML.


BioUML COPASI iBioSim CellDesigner Tellurium Morpheus
Capabilities
Model creation
Simulation
Parameter fitting
Model analysis
Database access
Formalism
ODE
Stochastic
Algebraic
Discrete
Modular modeling
Agent-based
Rule-based
Population-based
Standards
SBML
SBGN
SedML
Antimony
Bionetgen
BioPAX
Availability
Windows
Linux
MacOS
Web application
Platform
Retrieved from "https://wiki.biouml.org/index.php?title=Tools_Comparison&oldid=8403"
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox