Difference between revisions of "Server ICT"
From BioUML platform
Ilya Kiselev (Talk | contribs) (→Available resources) |
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| − | This is | + | This is main free BioUML server for systems biology. |
It is located at Institute of [http://www.ict.nsc.ru/en Computational Technologies], Novosibirsk city, Russia. | It is located at Institute of [http://www.ict.nsc.ru/en Computational Technologies], Novosibirsk city, Russia. | ||
==How to start== | ==How to start== | ||
| − | * | + | * [https://ict.biouml.org/bioumlweb/#anonymous=true Start without login] |
* Start - https://ict.biouml.org/bioumlweb | * Start - https://ict.biouml.org/bioumlweb | ||
==Registration== | ==Registration== | ||
| + | |||
==Collaborative work== | ==Collaborative work== | ||
Revision as of 21:36, 31 December 2018
This is main free BioUML server for systems biology.
It is located at Institute of Computational Technologies, Novosibirsk city, Russia.
Contents |
How to start
Registration
Collaborative work
Project
Available resources
- Biomodels - latest version of computational models of biological processes developed by EMBL-EBI European Bioinformatics Institute
- Tests SBML - test suite version 3.3.0 (latest) developed by creators of Systems Biology Markup Language (SBML).
Results for different tools are presented SBML site. BioUML currently is the only tool on the site which passes every test.
- Tests Stochastic - discrete stochastic models test suite developed for for stochastic simulators (Gillespie-type)
- PantherDB - models imported (with preserving of the original layout) from the latest version of PANTHER (Protein ANalysis THrough Evolutionary Relationships) database.
- Reactome - models imported (with preserving of the original layout) from the REACTOME pathway database
Examples
- DAE models - examples of dynamic models including ordinary differential and algebraic equations. Including simulation of ball jumping off walls and classic Lorenz model.
To perform numerical calculation should open Simulation tab and push Simulate button (see fig to the right).
- SBGN - examples of Systems Biology Graphic Notation diagrams created in BioUML.
- Optimization - examples of parameter fitting of dynamic models.
- SedML - workflows automatically generated from SedML documents into BioUML.
