Difference between revisions of "Parameter identifiability (table) (analysis)"

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Revision as of 19:00, 13 February 2017

Analysis title
Default-analysis-icon.png Parameter identifiability (table)
Provider
Institute of Systems Biology
Class
IdentifiabilityAnalysis
Plugin
biouml.plugins.optimization (Optimization plug-in)

Description

Parameter identifiability which uses tables as input

Parameters:

  • Diagram – Path to input diagram
  • Parameters table – Table with list of parameters to check identifiability (must contain "Min", "Max", "Val" columns)
  • Observables table – Table with data about observables values and time
  • Time column – Name of the column with time values from the "Observbles table" (will search for "time" if not selected)
  • Step size – Value of default step size during parameter identifiability testing
  • Maximum identifiability steps – Maximum number of steps during parameter identifiability testing (in one direction)
  • Degrees of freedom – Number of degrees of freedom
  • Confidence level – Confidence level which is used to define confidence interval
  • Optimization method parameters – Optimization method parameters
    • Optimization method name – Name of optimization method to use
    • Number of iterations – Number of iterations during optimization
    • Populations size – Populations size
    • Calculation accuracy – Calculation accuracy
    • Grid length – Grid length
    • Grid width – Grid width
    • Number of particles – The total number of particles
  • Weight method (expert) – Method which will be used to evaluate weights for objective function
  • Weights table (expert) – Table with data about weights for observable values
  • Weight column (expert) – Name of the column with weights from the "Weights table" (will set weights to 1.0 if not selected)
  • Output path – Path to the output table
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