Difference between revisions of "GTRD statistics"
From BioUML platform
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=== Control experiments === | === Control experiments === | ||
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=== Experiments by transcription factor === | === Experiments by transcription factor === | ||
Revision as of 17:44, 26 August 2016
5072 ChIP-seq experiments for 476 human and 257 mouse TFs that correspond to 542 TFClass classes.
Contents |
Experiments by species
Control experiments
Experiments by transcription factor
9.37 experiments per transcription factor in average.
54% of TFs have been measured in more than one experiment.
Top 10 transcription factors
| Transcription Factor | Number of ChIP-seq experiments |
|---|---|
| CTCF | 282 |
| AR | 117 |
| PU.1 | 103 |
| ERα | 92 |
| c-Myc | 79 |
| C/EBPβ | 74 |
| NF-κB p65 | 70 |
| GR | 53 |
| REST | 51 |
| GATA-1 | 51 |
ChIP-seq peaks
| Total: | 5.9515E7 |
|---|---|
| Per experiment in avg.: | 32899 |
| Experiments with peaks: | 1809 |
Alignment
| Total: | 5.8848E10 |
|---|---|
| Per experiment in avg.: | 2.5675E7 |
| Experiments with alignment: | 2292 |
Raw reads
| Total: | 8.0808E10 |
|---|---|
| Per experiment in avg.: | 3.4937E7 |
| Experiments with alignment: | 2313 |
Percent aligned per experiment distribution
