Difference between revisions of "Correlations of best sites (analysis)"
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* '''Matrix''' – Path to positional weight matrix | * '''Matrix''' – Path to positional weight matrix | ||
* '''Output table path''' – Path to the output table | * '''Output table path''' – Path to the output table | ||
| + | * '''Types of site models''' – Select site models for comparative analysis | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 11:19, 13 January 2014
- Analysis title
Correlations of best sites
- Provider
- Institute of Systems Biology
- Class
BestSiteCorrelations- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Best sites: correlation between best sites and characteristics of single chip-seq track; summit(yes/no)
Parameters:
- Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Is around summit – Is around summit
- Minimal region length – Minimal length of sequence region
- Matrix – Path to positional weight matrix
- Output table path – Path to the output table
- Types of site models – Select site models for comparative analysis
