Difference between revisions of "GTRD statistics"
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==== Top 10 transcription factors ==== | ==== Top 10 transcription factors ==== | ||
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Revision as of 14:53, 7 August 2013
2417 ChIP-seq experiments for 470 distinct sequence specific transcription factors
Contents |
Experiments by species
Control experiments
Experiments by transcription factor
4.07 experiments per transcription factor in average.
284 (60%) transcription factors measured only in one experiment.
Top 10 transcription factors
| Transcription Factor | ChIP-seq experiments count |
|---|---|
| CTCF [11] | 195 |
| c-Myc | 45 |
| Estrogen receptor α (ERα) (NR3A1) | 44 |
| REST [1+7+1] (NRSF, XBR) | 37 |
| C/EBPβ (NF-IL6-1) | 37 |
| GATA-1 (GF-1, EryF1, NF-E1) | 33 |
| NF-κB p65 (RelA) | 30 |
| Max | 30 |
| PU.1 (Spi-1) | 29 |
| Glucocorticoid receptor (GR) (NR3C1) | 24 |
ChIP-seq peaks
| Total: | 5.9515E7 |
|---|---|
| Per experiment in avg.: | 32899 |
| Experiments with peaks: | 1809 |
Alignment
| Total: | 5.8848E10 |
|---|---|
| Per experiment in avg.: | 2.5675E7 |
| Experiments with alignment: | 2292 |
Raw reads
| Total: | 8.0808E10 |
|---|---|
| Per experiment in avg.: | 3.4937E7 |
| Experiments with alignment: | 2313 |
Percent aligned per experiment distribution
