View source for GTRD statistics

== Statistics for version 19.10 (version 19.04) ==

=== ChIP-seq ===

{| class="wikitable"
! Species
! ChIP-seq experiments
! Transcription factors
! ChIP-seq reads<br />
×10<sup>9</sup>
! Reads aligned<br />
×10<sup>9</sup>
! ChIP-seq peaks<br />
×10<sup>6</sup>
! Clusters<br />
×10<sup>6</sup>
! Metaclusters<br />
×10<sup>6</sup>
|-
| Arabidopsis thaliana
| 454 <span class="prev_version">(424)</span>
| 124 <span class="prev_version">(120)</span>
| 25.3 <span class="prev_version">(24.2)</span>
| 15.1 <span class="prev_version">(14.4)</span>
| 4.8 <span class="prev_version">(2.9)</span>
| 3.8 <span class="prev_version">(2.2)</span>
| 0.44 <span class="prev_version">(0.38)</span>
|-
| Caenorhabditis elegans
| 1558 <span class="prev_version">(1508)</span>
| 331 <span class="prev_version">(326)</span>
| 30.5 <span class="prev_version">(26.6)</span>
| 21.5 <span class="prev_version">(19.1)</span>
| 6.2 <span class="prev_version">(3.4)</span>
| 4.5 <span class="prev_version">(2.4)</span>
| 0.5 <span class="prev_version">(0.4)</span>
|-
| Danio rerio
| 55 <span class="prev_version">(51)</span>
| 21 <span class="prev_version">(20)</span>
| 2.4 <span class="prev_version">(2.1)</span>
| 1,2 <span class="prev_version">(1.1)</span>
| 2.2 <span class="prev_version">(2.1)</span>
| 2.3 <span class="prev_version">(1.9)</span>
| 0.28 <span class="prev_version">(0.26)</span>
|-
| Drosophila melanogaster
| 2366 <span class="prev_version">(2182)</span>
| 569 <span class="prev_version">(552)</span>
| 79.8 <span class="prev_version">(74.4)</span>
| 56.8 <span class="prev_version">(53.1)</span>
| 19.3 <span class="prev_version">(10.5)</span>
| 5.4 <span class="prev_version">(7.4)</span>
| 0.7 <span class="prev_version">(1.4)</span>
|-
| Homo sapiens
| 13515 <span class="prev_version">(10675)</span>
| 1339 <span class="prev_version">(1158)</span>
| 783.0 <span class="prev_version">(616.3)</span>
| 606.9 <span class="prev_version">(483.3)</span>
| 1102.3 <span class="prev_version">(818)</span>
| 703.6 <span class="prev_version">(505.2)</span>
| 91.7 <span class="prev_version">(60.5)</span>
|-
| Mus musculus
| 10728 <span class="prev_version">(8055)</span>
| 738 <span class="prev_version">(584)</span>
| 577.5 <span class="prev_version">(403.4)</span>
| 381.9 <span class="prev_version">(273.1)</span>
| 943.7 <span class="prev_version">(699.8)</span>
| 598.8 <span class="prev_version">(431.6)</span>
| 80.8 <span class="prev_version">(56.0)</span>
|-
| Rattus norvegicus
| 187 <span class="prev_version">(153)</span>
| 36 <span class="prev_version">(29)</span>
| 9.5 <span class="prev_version">(7.5)</span>
| 6.1 <span class="prev_version">(4.8)</span>
| 11.0 <span class="prev_version">(9.3)</span>
| 9.2 <span class="prev_version">(7.6)</span>
| 1.4 <span class="prev_version">(1.1)</span>
|-
| Saccharomyces cerevisiae
| 1581 <span class="prev_version">(1364)</span>
| 161 <span class="prev_version">(142)</span>
| 25.8 <span class="prev_version">(20.3)</span>
| 19.2 <span class="prev_version">(15.5)</span>
| 1.62 <span class="prev_version">(0.66)</span>
| 0.84 <span class="prev_version">(0.3)</span>
| 0,056 <span class="prev_version">(0.038)</span>
|-
| Schizosaccharomyces pombe
| 226 <span class="prev_version">(222)</span>
| 57 <span class="prev_version">(55)</span>
| 3.5 <span class="prev_version">(3.4)</span>
| 2.6 <span class="prev_version">(2.6)</span>
| 0.249 <span class="prev_version">(0.11)</span>
| 0.18 <span class="prev_version">(0.09)</span>
| 0.014 <span class="prev_version">(0.011)</span>
|-
| Total
| 30670 <span class="prev_version">(24634)</span>
| 3376 <span class="prev_version">(2986)</span>
| 1537.3 <span class="prev_version">(1178.3)</span>
| 1111.3 <span class="prev_version">(867.1)</span>
| 2091.3 <span class="prev_version">(1546.7)</span>
| 1328.6 <span class="prev_version">(958.7)</span>
| 175.9 <span class="prev_version">(120.1)</span>
|}

=== DNase-seq ===

{| class="wikitable"
!width="25%"| Species
!width="25%"| DNase-seq experiments
!width="25%"| DNase I hypersensitive sites (DHSs)<br />
×10<sup>6</sup>
!width="25%"| DNase-seq footprints (FDR<0.01)<br />
×10<sup>6</sup>
|-
| Homo sapiens
| 1482 <span class="prev_version">(739)</span>
|
* macs2: 238.2
* hotspot2: 169.2
|
* macs2: 25.90
* hotspot2: 25.07
|-
| Mus musculus
| 103 <span class="prev_version">(103)</span>
|
* macs2: 20.6
* hotspot2: 22.0
|
* macs2: 4.44
* hotspot2: 4.14
|-
| Total
| 1585 <span class="prev_version">(842)</span>
|
* macs2: 258.8
* hotspot2: 191.2
|
* macs2: 30.34
* hotspot2: 29.21
|}