View source for Fantom analysis

;Analysis title
:[[File:Default-analysis-icon.png]] Fantom analysis
;Provider
:[[Institute of Systems Biology]]
;Class
:{{Class|biouml.plugins.bindingregions.analysis.FantomAnalysis}}
;Plugin
:[[Biouml.plugins.bindingregions (plugin)|biouml.plugins.bindingregions (Binding-regions related analyses)]]

==== Description ====
Analysis of FANTOM expression values by using GTRD peaks

==== Parameters: ====

* '''Option''' – Please, select option (i.e. select the concrete session of given analysis).
* '''Parameters for OPTION_01''' – Parameters for OPTION_01
** '''Path to input folder''' – Path to input folder
* '''Parameters for OPTION_02''' – Parameters for OPTION_02
** '''Path to folder with tracks''' – Path to folder with tracks
** '''Track names''' – Please, select track names
** '''Path to file''' – Path to file
** '''Sequences collection''' – Select a source of nucleotide sequences
*** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
*** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
** '''Promoter regions''' – Promoter regions
* '''Parameters for OPTION_03''' – Parameters for OPTION_03
** '''Path to input folder''' – Path to input folder
* '''Parameters for OPTION_04''' – Parameters for OPTION_04
** '''Path to file''' – Path to file
** '''Path to input folder''' – Path to input folder
** '''Cell line''' – Cell line
* '''Path to output folder''' – Path to output folder

[[Category:Analyses]]
[[Category:Binding regions (analyses group)]]
[[Category:ISB analyses]]
[[Category:Autogenerated pages]]