View source for Systems biology - model import 02

To import SBML model, do the following:
<ol>
<li>Find the folder in the BioUML repository where you want to download the model (for example, use the temporary folder in the tree: <i>data/Collaboration/Demo/Data/Temp</i>). Then, right-click on this folder and select <b>"Import"</b>.

<br><br>[[File:import_model_01.png]]<br><br>

<li>In the window that opens, click on the <b>"Computer"</b> button and find the document with the model in the file system of your computer.

<br><br>[[File:import_model_02.png]]<br><br>

<li>Select the document and click on the <b>"Start"</b> button.

<br><br>[[File:import_model_03.png]]<br><br>

<li>The model will appear in the BioUML repository and will be opened in a new workspace tab.

<br><br>[[File:import_model_04.png]]<br><br>
</ol>

<h2>Adjusting model layout</h2>

To change the default layout of the model, use the <b>Layout</b> tab in the right bottom panel.

<br>[[File:model_layout_01.png]]<br><br>

Currently, BioUML contains the folloing layout schemes:
*[[Hierarchical layout]] (default)
*[[Orthogonal layout]]
*[[Force directed layout]]
*[[Cross cost grid layout]]
*[[Grid layout]]

<br>Select the desired scheme and click on the <b>Prepare layout</b> button [[File:Execute_icon.png]]. The newly generated layout will be shown on the right in the same tab.

<br>[[File:model_layout_02.png]]<br><br>

Then, click on the <b>Apply layout</b> button [[File:Add2docpane_icon.png]] to apply this layout to the model diagram in the document pane.

<br>[[File:model_layout_03.png]]<br><br>

The selected layout scheme will apply to the model.

<br>[[File:model_layout_04.png]]<br><br>

<h2>Basic model editing</h2>

To edit any entity of the model, click on the corresponding element in the diagram and then click the <b>Edit</b> button [[File:Edit_icon.png]].

<br>[[File:systems_biology_egiting_entities.png]]<br><br>

The same actions can be performed for model reactions.

<br>[[File:systems_biology_egiting_reactions.png]]<br><br>

To edit model variables, use the <b>Variables</b> tab and after making changes, click the <b>Save</b> button [[File:Save_icon.png]] to reflect these changes in the current version of the model.

<br>[[File:systems_biology_egiting_parameters.png]]