View source for GO installation

This page describes how to install or update Gene onthology database and integrate it with [[BioUML server]] or [[BioUML workbench]].

* Download database dump from GO ftp: <code><nowiki>ftp://ftp.geneontology.org/pub/go/godatabase/archive/full/latest/go_(date)-assocdb-data.gz</nowiki></code>
* Go to BioUML src directory/db_setup/GO
* Edit build.xml there:
** INPUT_DIRECTORY:  where DB dump is located
** FILE_NAME: name of DB dump
** TARGET_PATH: $SERVER_PATH/repo
** DB_HOST, USER, PASS, DATABASE: mysql database to install into (will drop any existing database with the same name and recreate it; make sure that USER/PASS has all privileges to that database).
* Run ant (with default target “install”)

=== Notes ===

#Lucene indexes should be created separately for installed Ensembl. See [[Lucene indexes creation]] for details.

[[Category:Installation]]