Difference between revisions of "Ru.biosoft.analysis (plugin)"

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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Version
 
;Version
:0.9.4
+
:0.9.10
  
 
=== Extension points ===
 
=== Extension points ===
Line 14: Line 14:
 
=== Analysis methods ===
 
=== Analysis methods ===
 
Analysis methods defined in this plugin:
 
Analysis methods defined in this plugin:
*[[Affymetrix normalization (analysis)|Affymetrix normalization]]
+
*[[File:Data-Affymetrix-normalization-icon.png]] [[Affymetrix normalization (analysis)|Affymetrix normalization]]
*[[Agilent normalization (analysis)|Agilent normalization]]
+
*[[File:Data-Agilent-normalization-icon.png]] [[Agilent normalization (analysis)|Agilent normalization]]
*[[Annotate table (analysis)|Annotate table]]
+
*[[File:Data-Annotate-diagram-icon.png]] [[Annotate diagram (analysis)|Annotate diagram]]
*[[CRC Analysis|CRC Analysis]]
+
*[[File:Data-Annotate-table-icon.png]] [[Annotate table (analysis)|Annotate table]]
*[[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]]
+
*[[File:Default-analysis-icon.png]] [[CR cluster selector (analysis)|CR cluster selector]]
*[[Convert table (analysis)|Convert table]]
+
*[[File:Data-CRC-Analysis-icon.png]] [[CRC Analysis]]
*[[Copy folder (analysis)|Copy folder]]
+
*[[File:Default-analysis-icon.png]] [[Check quotas (analysis)|Check quotas]]
*[[Correlation Analysis|Correlation Analysis]]
+
*[[File:Default-analysis-icon.png]] [[Clean up SQL database (analysis)|Clean up SQL database]]
*[[Create folder (analysis)|Create folder]]
+
*[[File:Data-Cluster-analysis-by-K-means-icon.png]] [[Cluster analysis by K-means (analysis)|Cluster analysis by K-means]]
*[[Export element (analysis)|Export element]]
+
*[[File:Data-Convert-table-icon.png]] [[Convert table (analysis)|Convert table]]
*[[Extend network (analysis)|Extend network]]
+
*[[File:Default-analysis-icon.png]] [[Copy data element (analysis)|Copy data element]]
*[[Filter table (analysis)|Filter table]]
+
*[[File:Default-analysis-icon.png]] [[Copy folder (analysis)|Copy folder]]
*[[Fold-Change calculation (analysis)|Fold-Change calculation]]
+
*[[File:Statistics-Correlation-Analysis-icon.png]] [[Correlation Analysis]]
*[[Hypergeometric analysis|Hypergeometric analysis]]
+
*[[File:Data-Create-folder-icon.png]] [[Create folder (analysis)|Create folder]]
*[[Illumina normalization (analysis)|Illumina normalization]]
+
*[[File:Default-analysis-icon.png]] [[Diagram graph compare analysis]]
*[[Join diagrams (analysis)|Join diagrams]]
+
*[[File:Statistics-Differential-expression-with-DESeq-icon.png]] [[Differential expression with DESeq (analysis)|Differential expression with DESeq]]
*[[Join several tables (analysis)|Join several tables]]
+
*[[File:Admin-Export-element-icon.png]] [[Export element (analysis)|Export element]]
*[[Join table (analysis)|Join table]]
+
*[[File:Molecular-networks-Extend-network-icon.png]] [[Extend network (analysis)|Extend network]]
*[[Meta analysis|Meta analysis]]
+
*[[File:Default-analysis-icon.png]] [[Filter duplicate rows (analysis)|Filter duplicate rows]]
*[[Polynomial Regression analysis|Polynomial Regression analysis]]
+
*[[File:Data-Filter-table-icon.png]] [[Filter table (analysis)|Filter table]]
*[[Select table columns (analysis)|Select table columns]]
+
*[[File:Statistics-Fold-Change-calculation-icon.png]] [[Fold-Change calculation (analysis)|Fold-Change calculation]]
*[[Up and Down Identification (analysis)|Up and Down Identification]]
+
*[[File:Default-analysis-icon.png]] [[Group table rows (analysis)|Group table rows]]
*[[Venn diagrams (analysis)|Venn diagrams]]
+
*[[File:Statistics-Hypergeometric-analysis-icon.png]] [[Hypergeometric analysis]]
 +
*[[File:Data-Illumina-normalization-icon.png]] [[Illumina normalization (analysis)|Illumina normalization]]
 +
*[[File:Molecular-networks-Join-diagrams-icon.png]] [[Join diagrams (analysis)|Join diagrams]]
 +
*[[File:Data-Join-several-tables-icon.png]] [[Join several tables (analysis)|Join several tables]]
 +
*[[File:Data-Join-table-icon.png]] [[Join table (analysis)|Join table]]
 +
*[[File:Default-analysis-icon.png]] [[Merge table columns (analysis)|Merge table columns]]
 +
*[[File:Statistics-Meta-analysis-icon.png]] [[Meta analysis]]
 +
*[[File:Default-analysis-icon.png]] [[Plot bar chart (analysis)|Plot bar chart]]
 +
*[[File:Default-analysis-icon.png]] [[Plot pie chart (analysis)|Plot pie chart]]
 +
*[[File:Default-analysis-icon.png]] [[Plot scatter chart (analysis)|Plot scatter chart]]
 +
*[[File:Statistics-Polynomial-Regression-analysis-icon.png]] [[Polynomial Regression analysis]]
 +
*[[File:Default-analysis-icon.png]] [[Quantile normalization (analysis)|Quantile normalization]]
 +
*[[File:Default-analysis-icon.png]] [[Remove unobservable molecules (analysis)|Remove unobservable molecules]]
 +
*[[File:Default-analysis-icon.png]] [[Select random rows (analysis)|Select random rows]]
 +
*[[File:Data-Select-table-columns-icon.png]] [[Select table columns (analysis)|Select table columns]]
 +
*[[File:Default-analysis-icon.png]] [[Select top rows (analysis)|Select top rows]]
 +
*[[File:Default-analysis-icon.png]] [[Share molecules (analysis)|Share molecules]]
 +
*[[File:Default-analysis-icon.png]] [[Sign test (analysis)|Sign test]]
 +
*[[File:Default-analysis-icon.png]] [[Super annotate table (analysis)|Super annotate table]]
 +
*[[File:Statistics-Table-imputation-icon.png]] [[Table imputation (analysis)|Table imputation]]
 +
*[[File:Default-analysis-icon.png]] [[Transform table (analysis)|Transform table]]
 +
*[[File:Statistics-Up-and-Down-Identification-icon.png]] [[Up and Down Identification (analysis)|Up and Down Identification]]
 +
*[[File:Data-Venn-diagrams-icon.png]] [[Venn diagrams (analysis)|Venn diagrams]]
 +
 
 +
=== Host objects ===
 +
JavaScript [[Host object (extension point)|host objects]] defined in this plugin:
 +
*[[Microarray (host object)|microarray]]
 +
*[[Normalize (host object)|normalize]]
 +
*[[Transform (host object)|transform]]
 +
 
 +
=== Reference types ===
 +
[[Reference type]]s defined in this plugin:
 +
*[[File:ReferenceType-CategoryType-icon.png]] [[Categories (reference type)|Categories]]
 +
*[[File:ReferenceType-GeneTableType-icon.png]] [[Genes (reference type)|Genes]]
 +
*[[File:ReferenceType-PathwayType-icon.png]] [[Pathways (reference type)|Pathways]]
 +
*[[File:ReferenceType-ProbeTableType-icon.png]] [[Probes (reference type)|Probes]]
 +
*[[File:ReferenceType-ProteinTableType-icon.png]] [[Proteins (reference type)|Proteins]]
 +
*[[File:ReferenceType-SubstanceType-icon.png]] [[Substances (reference type)|Substances]]
 +
*[[File:ReferenceType-TranscriptTableType-icon.png]] [[Transcripts (reference type)|Transcripts]]
  
 
[[Category:Plugins]]
 
[[Category:Plugins]]
 +
[[Category:ISB plugins]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 16:35, 12 March 2019

ID
ru.biosoft.analysis
Name
Common methods of data analysis plug-in
Provider
Institute of Systems Biology
Version
0.9.10

Contents

[edit] Extension points

Extension points defined in this plugin:

[edit] Analysis methods

Analysis methods defined in this plugin:

[edit] Host objects

JavaScript host objects defined in this plugin:

[edit] Reference types

Reference types defined in this plugin:

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