Find regulatory regions (analysis)

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Analysis title
Default-analysis-icon.png Find regulatory regions
Provider
Biosoft
Class
FindRegulatoryRegions
Plugin
biouml.plugins.genomeenhancer (Genome Enhancer)

Parameters:

  • Input genes – Input genes
  • ChIP-seq peaks – ChIP-seq peaks
  • Ensembl database – Ensembl database
  • CAGE TSS database – Select type of database to extract TSSs
  • Cell/Tissue condition – Cell/Tissue condition
  • TSS selection – Selection of TSS if multiple TSSs are known
  • Promoter from – Promoter from
  • Promoter to – Promoter to
  • Shift of left gene bound position (expert) – Shift of left gene bound position
  • Shift of right gene bound position (expert) – Shift of right gene bound position
  • Regulatory region from (expert) – Regulatory region from
  • Regulatory region to (expert) – Regulatory region to
  • Output path – Path for the output track
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