Difference between revisions of "Track to gene set (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Match-sites-and-genes-Track-to-gene-set-icon.png]] Track to gene set |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|biouml.plugins.ensembl.analysis.TrackToGeneSet}} | ||
;Plugin | ;Plugin | ||
| − | :[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl | + | :[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)]] |
==== Description ==== | ==== Description ==== | ||
| − | Convert track to gene set (get all genes which lie near the sites from the track) | + | Convert track to gene set (get all genes which lie near the sites from the track). |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 16: | Line 18: | ||
* '''3<nowiki>'</nowiki> region size''' – Include 3<nowiki>'</nowiki> region of given size in bp | * '''3<nowiki>'</nowiki> region size''' – Include 3<nowiki>'</nowiki> region of given size in bp | ||
* '''Types of resulting column''' – Types of resulting column | * '''Types of resulting column''' – Types of resulting column | ||
| + | * '''allGenes''' – allGenes | ||
* '''Output name''' – Output name | * '''Output name''' – Output name | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Match sites and genes (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Track to gene set
- Provider
- Institute of Systems Biology
- Class
TrackToGeneSet- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
[edit] Description
Convert track to gene set (get all genes which lie near the sites from the track).
[edit] Parameters:
- Input tracks – Track(s) to be converted to genes
- Species – Taxonomical species
- 5' region size – Include 5' region (promoter) of given size in bp
- 3' region size – Include 3' region of given size in bp
- Types of resulting column – Types of resulting column
- allGenes – allGenes
- Output name – Output name
