Difference between revisions of "Track to gene set (analysis)"

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;Analysis title
 
;Analysis title
:[[File:BSA-Track-to-gene-set-icon.png]] Track to gene set
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:[[File:Match-sites-and-genes-Track-to-gene-set-icon.png]] Track to gene set
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Class
 +
:{{Class|biouml.plugins.ensembl.analysis.TrackToGeneSet}}
 
;Plugin
 
;Plugin
:[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl using EnsJ)]]
+
:[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)]]
  
 
==== Description ====
 
==== Description ====
Convert track to gene set (get all genes which lie near the sites from the track)
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Convert track to gene set (get all genes which lie near the sites from the track).
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''3<nowiki>'</nowiki> region size''' – Include 3<nowiki>'</nowiki> region of given size in bp
 
* '''3<nowiki>'</nowiki> region size''' – Include 3<nowiki>'</nowiki> region of given size in bp
 
* '''Types of resulting column''' – Types of resulting column
 
* '''Types of resulting column''' – Types of resulting column
 +
* '''allGenes''' – allGenes
 
* '''Output name''' – Output name
 
* '''Output name''' – Output name
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
+
[[Category:Match sites and genes (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Match-sites-and-genes-Track-to-gene-set-icon.png Track to gene set
Provider
Institute of Systems Biology
Class
TrackToGeneSet
Plugin
biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)

[edit] Description

Convert track to gene set (get all genes which lie near the sites from the track).

[edit] Parameters:

  • Input tracks – Track(s) to be converted to genes
  • Species – Taxonomical species
  • 5' region size – Include 5' region (promoter) of given size in bp
  • 3' region size – Include 3' region of given size in bp
  • Types of resulting column – Types of resulting column
  • allGenes – allGenes
  • Output name – Output name
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