Difference between revisions of "Track to gene set (analysis)"

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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Plugin
 
;Plugin
:[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl using EnsJ)]]
+
:[[Biouml.plugins.ensembl (plugin)|biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)]]
  
 
==== Description ====
 
==== Description ====

Revision as of 14:33, 15 May 2013

Analysis title
BSA-Track-to-gene-set-icon.png Track to gene set
Provider
Institute of Systems Biology
Plugin
biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)

Description

Convert track to gene set (get all genes which lie near the sites from the track)

Parameters:

  • Input tracks – Track(s) to be converted to genes
  • Species – Taxonomical species
  • 5' region size – Include 5' region (promoter) of given size in bp
  • 3' region size – Include 3' region of given size in bp
  • Types of resulting column – Types of resulting column
  • Output name – Output name
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