Difference between revisions of "MicroRNA finder (analysis)"

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==== Description ====
 
==== Description ====
Finds novel microRNA from genomic alignments of NGS reads
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Finds novel microRNA from genomic alignments of NGS reads.
  
 
==== Parameters: ====
 
==== Parameters: ====
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
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[[Category:MicroRNA (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png MicroRNA finder
Provider
Institute of Systems Biology
Class
MicroRNAFinder
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

Finds novel microRNA from genomic alignments of NGS reads.

[edit] Parameters:

  • Alignments – Genomic alignments of microRNA reads
  • Genome – Reference genome used for alignment
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Minimal cluster size – Minimal number of reads in cluster
  • Maximum read distance – Maxim distance between adjacent reads in cluster
  • Clusters – Resulting read clusters
  • Primary isoforms – Resulting primary microRNA isoforms
  • Longest isoforms – Resulting longest microRNA isoforms
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