Difference between revisions of "Linear Shifted Model (analysis)"

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(Automatic synchronization with BioUML)
 
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==== Description ====
 
==== Description ====
Linear Shifted Model of gene expression regulation
+
Linear Shifted Model of gene expression regulation.
  
 
==== Parameters: ====
 
==== Parameters: ====
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* '''Include degradation''' – Include protein degradation in gene regulation model
 
* '''Include degradation''' – Include protein degradation in gene regulation model
 
* '''Target smothing type''' – Smoothing type for target gene profile
 
* '''Target smothing type''' – Smoothing type for target gene profile
** '''class''' – class
+
** '''Error''' – Spline error
** '''nameInParent''' – nameInParent
+
** '''notificationEnabled''' – notificationEnabled
+
** '''parameter''' – parameter
+
** '''propagationEnabled''' – propagationEnabled
+
** '''type''' – type
+
** '''typeAsString''' – typeAsString
+
 
* '''Regulator smothing type''' – Smoothing type for regulator gene profile
 
* '''Regulator smothing type''' – Smoothing type for regulator gene profile
** '''class''' – class
+
** '''Error''' – Spline error
** '''nameInParent''' – nameInParent
+
** '''notificationEnabled''' – notificationEnabled
+
** '''parameter''' – parameter
+
** '''propagationEnabled''' – propagationEnabled
+
** '''type''' – type
+
** '''typeAsString''' – typeAsString
+
  
 
[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:GeneModels (analyses group)]]
+
[[Category:Gene models (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Default-analysis-icon.png Linear Shifted Model
Provider
Institute of Systems Biology
Class
LinearShiftedModelBuilding
Plugin
biouml.plugins.genemodels (Gene expression models building)

[edit] Description

Linear Shifted Model of gene expression regulation.

[edit] Parameters:

  • Number of experiments – Number of experiments
  • Experiments – Experiments
  • Regulator list – Table with regulators ID
  • Target list – Table with regulators ID
  • P-value threshold – Only results with a P-value below this threshold will appear in the output
  • Output table – Output table
  • Maximum shift – Maximum shift between regulator and target
  • Shift definition – Shift definition
  • Include degradation – Include protein degradation in gene regulation model
  • Target smothing type – Smoothing type for target gene profile
    • Error – Spline error
  • Regulator smothing type – Smoothing type for regulator gene profile
    • Error – Spline error
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